rs6168254 SNP Detail

Summary

• ID
  rs6168254
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr15:30239986 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGGACTTTA AAAAATTATT
  TATTTATTTA TTTATTTATT TATTTAATAT CTTGATCACA GCTTCCCCTC CCTCCTCTCC
  CCCAAGTCCC TCTCACCTCC CCTCCCCCAT ATATCTCAGG ACTTTAAAGA AAGTTATTTA
  TTAGATGATT ATAAAGTAAG GGGATTTAAA AGAACATCAA AAATGATACA GCGTATCTCT
  K
  TTTTTAGGTG CAGAGACTTT CTTTTTGGGG CTTCCCTTCT TTGTTTTAAT TTTAATTTAT
  GTGATTTTTT TTCTCAATGG GCATAAAAGT TCAGGTGCAT CCTTTCTTGT TTTCAATTTG
  TGTCTCTTCA GCAATGCTCT CTCATTTCTC AGAACGAGGG GAGTGTGGCT TCACAGAGTC
  AATTGGTGGC ATCTGTACCT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	C57BL/6J
ss8573790	WI_WGS_15_30317855	WI	MOUSE	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	C57BL/6J
rs6168254					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:30239986 () rs orientation: forward

Symbol	Name	Function Class
Ctnnd2	catenin delta 2	Intron
D15Mit249	DNA Segment, Chr 15, Massachusetts Institute of Technology-249	217 bp distal