rs6166742 SNP Detail

Summary

• ID
  rs6166742
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:141293429 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GTATCCGGG CCGAGGGAGC ATCTCTGAGG
  ACAGACAGCC CTCTAACCAC CACATGGATA GCTCATAATA ATCTCTCTCT TGGGGTTTTA
  AAATCAGCAG TTACAATTCT GAAACTGATT ATTTGATATT TGTATACTCT ACAGCTCTCC
  M
  TGGGATCTCA TTTTCAAAAA AAAAAAAAAT GTTCCCCTCC ATTGCCCTTC CCCATAGTCT
  AAATCTTTGC TTGTTTGTTC TGCTTTTTTT GCCCCCTGCA TCTGGGAGAG GAAACGTACC
  TAAGCATACA CATGTGTGCA AACACACAGA                                 
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	BALB/cByJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss8572276	WI_WGS_3_142096797	WI	MOUSE	f	SNP			A		C
ss61092044	NES16588667	PERLEGEN	MM_PANEL2	f	SNP	A	A		C		A	A		C	A	A	C		A
ss320993563	CHEV_3_141250632	CHEVERUD	SCREENING_POP	f	SNP								C					A
SNP Consensus Information
SNP					Consensus Type	AKR/J	BALB/cByJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs6166742					SNP	A	A	A	C	C	A	A	C	C	A	A	C	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61092044	NES16588667	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:141293429 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr586339	regulatory region 586339			1764 bp proximal
Unc5c	unc-5 netrin receptor C			Intron
				Noncoding-Transcript-Variant