rs6166498 SNP Detail

Summary

• ID
  rs6166498
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:150304700 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAGAC ACTTTCTCTT TCAATTTTTT
  W
  AATATTAATT TATTTTATGT TTATG                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	CZECHII/EiJ	LG/J	SM/J
ss8572032	WI_WGS_4_145613950	WI	MOUSE	f	SNP			A	T
ss45605516	mCV23295411	ABI	CRAMUS_MOUSE	f	SNP	T	T	A
ss148050389	ENSMUSSNP6753933	ENSEMBL	ENSEMBL_Sanger	f	SNP		T
ss321428670	CHEV_4_149594352	CHEVERUD	SCREENING_POP	f	SNP					T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	CZECHII/EiJ	LG/J	SM/J
rs6166498					SNP	T	T	A	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:150304700 () rs orientation: forward

Symbol	Name	Function Class
Rr605229	regulatory region 605229	439 bp distal
Rr605230	regulatory region 605230	518 bp distal
Rr605231	regulatory region 605231	147 bp distal
Rr605232	regulatory region 605232	77 bp proximal
Rr605233	regulatory region 605233	92 bp proximal
Tssr44739	transcription start site region 44739	458 bp downstream