rs6166469 SNP Detail

Summary

• ID
  rs6166469
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:108207580 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAATGTGTGA TGTGAGGGGT
  CTTAGGCTCA GAAAGACTCC CTAATAGCCA AAATGTAATC ACAATATGCA AATTAGACCC
  CCAATAAAGC TGTCAAAACG CGACTGCGAT GTTGGCAGCT GATAGAGACA GAGCAGTTCC
  TGTGTGAGAA AGTTGAGAAA GTTACTGTAC CTCATGGAAA GGAATGCAAT AGCAGCTTGC
  Y
  GCTGCACAAT GGTCTCCACG GGAGGTTAAG TCCTATCTCC ACCACTTGTT AGCCATGTGT
  GTGACTTGGG GCAAGTTATT TGGCCTCTCT GACCTTCCAT TTTATCACCT CAAAGGTAAG
  GAAGAAAATA TCCCCTCCCC TGGATTTGTG TGAGGATAAA ATTTACATAT ATATAAACTT
  GCTAGTAGAA CCAACATAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8572003	WI_WGS_4_106099869	WI	MOUSE	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6166469					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:108207580 () rs orientation: forward

Symbol	Name	Function Class
Gm46889	predicted gene, 46889	within coordinates
Gm54250	predicted gene, 54250	within coordinates
Rr597164	regulatory region 597164	1933 bp distal
Rr597165	regulatory region 597165	1006 bp distal
Rr597166	regulatory region 597166	within coordinates
Rr597167	regulatory region 597167	952 bp proximal