rs6166020 SNP Detail

Summary

• ID
  rs6166020
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:120430486 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCCTAAAGA TATGGCACAT
  GTCTCAAGGG TAGCAGTGGG TGGTGTGAGG CAGAGACCTT GTGCTGGGAA CCACAGGGAG
  ACAGTGAGAC AAGTTCCTCT CATCATTACT CATTATTACG ACCACATCGA GAAGCCTCAA
  TCTTTCCTGG ATTGGAGGCC TCTGTGGGAA TTAAAGGATA CAACACTGGC TTCCCCTTTA
  Y
  AGAGATGTCT ACTGCTCAGA CAGTGGGGCT CCACTAATGA GCTGGCACAG CAGATCCCAA
  ATACCAGTGG GAAAGTGAGC TGCTGTCCCA CAGGAGGGAA TGAGGAACCC ACCTTAGGCT
  CCTCAGCCAA CAGTAAAGGC CAATAAAAAA CTGGAGCAAA AAACAGAAGG GGAAAAAAAA
  AAATCAAGAT TCTCAGTGAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8571554	WI_WGS_6_121252835	WI	MOUSE	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6166020					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:120430486 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17921	CpG island 17921	730 bp proximal
Rr637856	regulatory region 637856	824 bp distal
Rr637857	regulatory region 637857	728 bp proximal