rs6164998 SNP Detail

Summary

• ID
  rs6164998
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:120430314 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGGCTGTCT CATTCAACTG
  TCCTGCCCAC AGATCACATC TGATCAGAGA ACCAATCTCA CAGCAAGGGA AGACGAGCAA
  TAGGCTTGTG CCTGAGCACT CTCGCCACAA TCACCCAGAA GCCAGTGGGT GACTTCCTAG
  ACACTTAGTC ACCGTGTCAA CTGTGAGATG ACACCCTAAA GATATGGCAC ATGTCTCAAG
  R
  GTAGCAGTGG GTGGTGTGAG GCAGAGACCT TGTGCTGGGA ACCACAGGGA GACAGTGAGA
  CAAGTTCCTC TCATCATTAC TCATTATTAC GACCACATCG AGAAGCCTCA ATCTTTCCTG
  GATTGGAGGC CTCTGTGGGA ATTAAAGGAT ACAACACTGG CTTCCCCTTT ATAGAGATGT
  CTACTGCTCA GACAGTGGGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8570530	WI_WGS_6_121252663	WI	MOUSE	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6164998					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:120430314 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17921	CpG island 17921	902 bp proximal
Rr637856	regulatory region 637856	652 bp distal
Rr637857	regulatory region 637857	900 bp proximal