rs6163971 SNP Detail

Summary

• ID
  rs6163971
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:120430111 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCTGCTTTA GAGGAGTCTT
  CACCAACAGC GAGGCCCGGG TGGAGTGGTT TCCCTAGGGC ACCAGCCAGA CATTAATAGC
  AAGCTGGTGA CCTCTCCCAC TGTAAGAGGA GGGAGTCGTC CTCCCTAGAG TAGATATATT
  TTTCCAGACA TGAACTTTCT TTCCTGCACA GTGCTTCTGC TAACATGCCC ATCTGCAGAC
  Y
  GGTGGGCTGT CTCATTCAAC TGTCCTGCCC ACAGATCACA TCTGATCAGA GAACCAATCT
  CACAGCAAGG GAAGACGAGC AATAGGCTTG TGCCTGAGCA CTCTCGCCAC AATCACCCAG
  AAGCCAGTGG GTGACTTCCT AGACACTTAG TCACCGTGTC AACTGTGAGA TGACACCCTA
  AAGATATGGC ACATGTCTCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8569494	WI_WGS_6_121252460	WI	MOUSE	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6163971					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:120430111 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17921	CpG island 17921	1105 bp proximal
Rr637856	regulatory region 637856	449 bp distal
Rr637857	regulatory region 637857	1103 bp proximal