rs6162150 SNP Detail

Summary

• ID
  rs6162150
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:52948804 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTCCACACC CGTCATGCTC
  TCTGCCCTCC AAAGTGACCA CTTCTCAAGA GCCCCTTAAA GCTCATAGAC ATCGCTCTCC
  CCATCTCTGA GGCTACTTCC CATCCTGGTC CTCATAAAGG CCGCGCGAAC ACTGCAGCCC
  CAGACCCCAG GGTTTGACCC AGAAAAGCAA ACAGGGGTCG GGTGTGGCCT CGGCGCCCCC
  R
  GGGAGCTGCG GGGAAGGCGA GCAACTTTCT CCCTGGATTC TCAGTCTGTC TGCCGCCCCC
  ACTCTCGCGC GTCCAGGACT GCGCGGCGGG GCCGAGGGGA GGGGACAGCG GCAAAGGGAG
  GGCGGGGAAG AGGCGGCGCG TGCCTCGCCT GCCAAAGCTG GAGCCGGCAT CCACCGTGTT
  CCCGGGCCGC ACGGCCGCAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8567670	WI_WGS_3_53500234	WI	MOUSE	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6162150					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:52948804 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13160	CpG island 13160	within coordinates
Gm42901	predicted gene 42901	within coordinates
Lhfpl6	LHFPL tetraspan subfamily member 6	164 bp upstream
Rr576626	regulatory region 576626	within coordinates
Rr576627	regulatory region 576627	56 bp proximal
Rr576628	regulatory region 576628	211 bp proximal
Rr576629	regulatory region 576629	755 bp proximal
Rr576630	regulatory region 576630	770 bp proximal
Rr576631	regulatory region 576631	1072 bp proximal
Tssr29102	transcription start site region 29102	134 bp upstream
Tssr29103	transcription start site region 29103	247 bp upstream