rs6159782 SNP Detail

Summary

• ID
  rs6159782
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  116
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:148573537 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                         CATCGTCGCT
  TTCCCTCGCA CTGAGGGCCC CTGGCATAGA CAGAGGAAAA GAGAACAAAC ACTTGTTGTG
  AGACTGAAAA GCATCAAGAA CACAAGGCTT GGGAAACAAA GCAAACGCCC ACACGGTGGC
  AAGACTGGTG ATTTACATTG CCTTCTGAAA AACACAGGAA GTGCTggtgc tgtagagatg
  actganggtt aagagagagt gcttcctgct cttccggagc cctgagctct gcttccagaa
  Y
  gcatttcagg tggcttgtga ccacgtgtCC ATCTGTCTGT CTGCCCCCCA CCCCCACTCT
  CTCTCATGAA CACACACACA GTAAAAATGA ATACATGGAG TTGGTAGTGA GCTTGCCTAA
  TCTATACCAG GATTTGTGTT CAATTCTCAC TAACAGGAGA GCAggaggaa gggagggagg
  gaaangggaa gggagagaaa gagaaaatga aggacggaga aataaatgga gggagagaga
  tggagggagg                                                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8565296	WI_WGS_3_149403729	WI	MOUSE	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6159782					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:148573537 () rs orientation: forward

Symbol	Name	Function Class
Adgrl2	adhesion G protein-coupled receptor L2	Intron
Rr587218	regulatory region 587218	within coordinates