rs6158978 SNP Detail

Summary

• ID
  rs6158978
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:9617705 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCACAGCCAT TAACTGGACA
  GGAGGCAGCT CTGAGGTCCA ACCCACTGGT GCTGAACTGC AAGTGCAGCT CTTCCTGATG
  GACAGCAGCG CTCGCTCCCT TCAGCTCTGT ATCAGCTTCC TGTTAACTTG ACCCAAGCTG
  GAGTCATCTC GGTGGAGAGA AAGCCTCCAT CAGACTGGTC TGCACAGCTC AGTGAAGCAA
  Y
  GTCTTGATCA ATGACTGAAG TGGAGGGTCC AGCCCACTCT GGGTGGTGCC ATCCTTGGAC
  AGACAGTTCG GGGTTATACA AGACAGCCGG CAGGACAAGC AGTGGCAAGC CAGTGATTAG
  GCAGCAGTCT CTATGGCTTC TGCATCAGTT CCTACCCTGC TTGAGCTCCT ACCTGGCTTT
  CCTCAATGAC AGATGTGCAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8564489	WI_WGS_3_9589107	WI	MOUSE	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6158978					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:9617705 () rs orientation: forward

Symbol	Name	Function Class
Gm65791	predicted gene, 65791	1071 bp upstream
Rr573443	regulatory region 573443	1344 bp distal
Rr573444	regulatory region 573444	28 bp distal
Zfp704	zinc finger protein 704	Intron