rs6158220 SNP Detail

Summary

• ID
  rs6158220
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:165650161 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTGTG GGTAATGGAG ACTGCCTAAC
  W
  GCAGCCCTTC TTCCCCAGGA GGAGC                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C3H/HeJ	C57BL/6J	DBA/2J	LG/J	SM/J
ss8563725	WI_WGS_2_166776264	WI	MOUSE	f	SNP			A	T
ss45259247	mCV25002475	ABI	CRAMUS_MOUSE	f	SNP	T	A		T	A
ss148244897	ENSMUSSNP183165	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	A			A
ss320608835	CHEV_2_165633741	CHEVERUD	SCREENING_POP	f	SNP						T	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C3H/HeJ	C57BL/6J	DBA/2J	LG/J	SM/J
rs6158220					SNP	T	A	A	T	A	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:165650161 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
2410087M07Rik	RIKEN cDNA 2410087M07 gene			within coordinates
Rr374212	regulatory region 374212			1498 bp upstream
Rr570013	regulatory region 570013			within coordinates
Tssr21733	transcription start site region 21733			666 bp downstream
Tssr21734	transcription start site region 21734			1998 bp upstream
Tssr27635	transcription start site region 27635			32 bp downstream
Zmynd8	zinc finger, MYND-type containing 8			Intron
				Noncoding-Transcript-Variant