rs6158058 SNP Detail

Summary

• ID
  rs6158058
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:30036952 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGATACACT AAATAAAGTC
  ACCATGGAGG TGGGTAACAG ACTTCCCACA TGATTGTATT ATGTTGATTC ACTTATGGGC
  AATTCCAAGA AACTATCAAG TCATTTTTTA TTGAAATTAT AAAATAACAC TCTTTTTTAA
  AGGAATATAT CCTTTGAGAC TAAATGTACT ATGAGAAAAT GTCTTGATGG GTAGTTAAAC
  R
  AGTGTAAATG CAGGAGCTGT ACTGTTTTAG AAATAAACTG TTGTTCTTGC CTCTTCTTTC
  ATGTAGCAGG ATGGCTCTAA GAAAATCCAC AGTGTGTACG TTGGAATAAC AGAAGATGTT
  CTTGACTTGT CTGGCTGCGG CTTTTGTTGC AGGACAAGTA GAGTCTATGT CTGGTCTCAA
  AATCATTGAA TCTGGGATGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss8563563	WI_WGS_3_29795400	WI	MOUSE	f	SNP							A		G
ss46886137	NES10820580	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A		A		A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6158058					SNP	A	A	A	A	A	A	A	A	G	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46886137	NES10820580	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:30036952 () rs orientation: forward

Symbol	Name	Function Class
Mecom	MDS1 and EVI1 complex locus	Intron
Rr574695	regulatory region 574695	989 bp distal
Rr574696	regulatory region 574696	1713 bp proximal