rs6157558 SNP Detail

Summary

• ID
  rs6157558
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:30036898 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTGTTCTGA CAGTATTAAA
  AAGGCTCTAT CTATACATGT TCTATTTATA TTACTTGATA CACTAAATAA AGTCACCATG
  GAGGTGGGTA ACAGACTTCC CACATGATTG TATTATGTTG ATTCACTTAT GGGCAATTCC
  AAGAAACTAT CAAGTCATTT TTTATTGAAA TTATAAAATA ACACTCTTTT TTAAAGGAAT
  M
  TATCCTTTGA GACTAAATGT ACTATGAGAA AATGTCTTGA TGGGTAGTTA AACAAGTGTA
  AATGCAGGAG CTGTACTGTT TTAGAAATAA ACTGTTGTTC TTGCCTCTTC TTTCATGTAG
  CAGGATGGCT CTAAGAAAAT CCACAGTGTG TACGTTGGAA TAACAGAAGA TGTTCTTGAC
  TTGTCTGGCT GCGGCTTTTG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8563062	WI_WGS_3_29795346	WI	MOUSE	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6157558					SNP	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:30036898 () rs orientation: forward

Symbol	Name	Function Class
Mecom	MDS1 and EVI1 complex locus	Intron
Rr574695	regulatory region 574695	935 bp distal
Rr574696	regulatory region 574696	1767 bp proximal