rs6157413 SNP Detail

Summary

• ID
  rs6157413
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:6789029 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACCTTCATT TTCAGTTCTT
  ATCAGAATCT AGGTATTAGA ACCAGTCTTT TTCTTATTTG TTGTTGTTGG TCAAGTTAAC
  ATTTCTCTGT TTTTACTAAG TATTTTGAGA CCTTTTAAGC AGAGCATCAT CATGTCTGGA
  TCATATACAT AACTGAGGCA GAGTCTTCAA TGAGAACTTC ACCCTTTGGT GAAGCTGGGT
  Y
  AGTTGTTAAG TTCTGAAGGA AGCAACCTTA CTATCCTATT TTAGTTAAGC TAAGAATAGC
  TAACACCCTT CACCAAGCAA AGCCAGGAAG CTGTATGAGG AACATCTCTG CTCTGTCTCA
  GTAACAATGT TACTGCCTGA AATCACAAAC TAGTTTATCT ACCTGGATGT TTCAAAGAAT
  GTGGTTCAAA ACCCAGTTGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	CZECHII/EiJ	DBA/2J	MSM/Ms
ss8562917	WI_WGS_4_6265663	WI	MOUSE	f	SNP			C	T
ss145964702	ENSMUSSNP3665127	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C			C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	CZECHII/EiJ	DBA/2J	MSM/Ms
rs6157413					SNP	C	C	C	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:6789029 () rs orientation: forward

Symbol	Name	Function Class
Rr588421	regulatory region 588421	1720 bp distal
Rr588422	regulatory region 588422	1491 bp proximal
Tox	thymocyte selection-associated high mobility group box	Intron