rs6157354 SNP Detail

Summary

• ID
  rs6157354
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:6788994 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTAGGAAG AACACCAATT
  ACCAAAGCAG GAAAATACCT TCATTTTCAG TTCTTATCAG AATCTAGGTA TTAGAACCAG
  TCTTTTTCTT ATTTGTTGTT GTTGGTCAAG TTAACATTTC TCTGTTTTTA CTAAGTATTT
  TGAGACCTTT TAAGCAGAGC ATCATCATGT CTGGATCATA TACATAACTG AGGCAGAGTC
  Y
  TCAATGAGAA CTTCACCCTT TGGTGAAGCT GGGTCAGTTG TTAAGTTCTG AAGGAAGCAA
  CCTTACTATC CTATTTTAGT TAAGCTAAGA ATAGCTAACA CCCTTCACCA AGCAAAGCCA
  GGAAGCTGTA TGAGGAACAT CTCTGCTCTG TCTCAGTAAC AATGTTACTG CCTGAAATCA
  CAAACTAGTT TATCTACCTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	CZECHII/EiJ	DBA/2J	MSM/Ms
ss8562858	WI_WGS_4_6265628	WI	MOUSE	f	SNP			T	C
ss145964698	ENSMUSSNP979745	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T			T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	CZECHII/EiJ	DBA/2J	MSM/Ms
rs6157354					SNP	T	T	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:6788994 () rs orientation: forward

Symbol	Name	Function Class
Rr588421	regulatory region 588421	1685 bp distal
Rr588422	regulatory region 588422	1526 bp proximal
Tox	thymocyte selection-associated high mobility group box	Intron