rs6157114 SNP Detail

Summary

• ID
  rs6157114
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr10:8637103 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAATGGTTT CTAAAAGTTT
  AGTGGCACAG TAGCAAGGGA TGTGACGAAT AAATGGTAGT CTGCATTTTC AAGGAACAAT
  TAGATCCTTG GGGGGGGGGG GGGCGCACAT GAGACCATCT TGAGCACAGA GTTATAGTTG
  CCTCCCTAGC TCCAAATCCG AGACACACTG TCACAGCGAA CAATCAGAAC AACCAGACTC
  R
  GTCATTTGTT TGTTTGTTTG TTTGTTTTTG TTTTTCGAGA CAGGGTTTCT CTGTATAGCC
  CTGGCTGTCC TGGAACTCAC TTTGTAGACC AGGCTGGCCT CGAACTCAGA AATCCGCCTG
  CCTCTGCCTC CCAAGTGCTG GGATTAAAGG TGTGCGCCAC CACCACCCAG CCAGACTCAG
  TCACCTTATT CCCCCTCCAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ	LG/J	SM/J
ss8562618	WI_WGS_10_8595375	WI	MOUSE	f	SNP	A	G
ss323245266	CHEV_10_8481137	CHEVERUD	SCREENING_POP	f	SNP			G	G
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ	LG/J	SM/J
rs6157114					SNP	A	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:8637103 () rs orientation: forward

Symbol	Name	Function Class
Rr384117	regulatory region 384117	289 bp upstream
Rr427375	regulatory region 427375	within coordinates
Rr427376	regulatory region 427376	695 bp proximal
Sash1	SAM and SH3 domain containing 1	Intron
Tssr3133	transcription start site region 3133	1046 bp downstream
Tssr96639	transcription start site region 96639	713 bp upstream
Tssr96640	transcription start site region 96640	880 bp downstream
Tssr96641	transcription start site region 96641	930 bp downstream
Tssr96642	transcription start site region 96642	949 bp downstream
Tssr96643	transcription start site region 96643	1010 bp downstream
Tssr96644	transcription start site region 96644	1112 bp downstream
Tssr96645	transcription start site region 96645	1240 bp downstream