rs6157042 SNP Detail

Summary

• ID
  rs6157042
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:95679028 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCATCTGCTT ACTGCACAAA
  CACATCAAGC ACACGGCCCA CACCAAGGCG CTGCACTTAC TACTCCTTTG TTTGCAGTAC
  TCTTTTCGCA AATTACTCCA CAGTTCATAG CCCTTGGCTC CTCCCGGGAT TTGCTTAGCC
  TTAACCTTCC GACTGTCACT CCCTCTACTG TAGGCACCAT GTCCTTCCTG GCTTTTCCTA
  R
  TAGCATAAAT CAGGCCGGGT GAGGCAAGTG GTGGTGTGCA TTTCCTAGCT AGTAGCTAGG
  ATGATCATTT GAGAGGACTA AAAGCTGAAG ACTAGTCTAA CAGGGTATGA GGCCTTCTCT
  CAAAGAACAA AACAAACACG CACCACCCAG AACTATTTAT TTCCAAGAAT GGAGTCCCAG
  GAGAATTCTG AGTACTTGTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	C3H/HeJ	C57BL/6J	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss8562546	WI_WGS_6_96510339	WI	MOUSE	f	SNP					G	A
ss48021245	NES11896766	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G			G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	C3H/HeJ	C57BL/6J	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6157042					SNP	G	G	G	G	G	A	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48021245	NES11896766	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:95679028 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr635030	regulatory region 635030			837 bp distal
Rr635031	regulatory region 635031			within coordinates
Rr635032	regulatory region 635032			262 bp proximal
Suclg2	succinate-Coenzyme A ligase, GDP-forming, beta subunit			Intron
				Noncoding-Transcript-Variant