rs6157039 SNP Detail

Summary

• ID
  rs6157039
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:90455659 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCGGGAAGA CCCAAAGAAA
  CCCAGAGCAC AGTCAGAGTG CCAGCACAGG TTGAAGGAGA GGTGTGAGGA GAAGGGGAGG
  TTGTGAGAAG TGCAATGGCT ATAGGAGGCA GGAGAGGAGA GAGAGCATGT CCTGTGAGTG
  CATTGGGAGG GATAGGAGGG AGGCTATTTG GCCCTTCCCC AGCACAGGTG GAGGAAGGAA
  R
  TATGGATAGC TGGGACAGAG TGGAGATCAG TGCCAATGAC TCAAAATGCA GGCCCAAAAC
  AAAGTTTGTT AGCTCCCCAC GGTGTGATCA CTACTGAAGC CATGTCACTT TGACAGAAGA
  AGGAGGACCA CCCGGGGCAC CCCACAGCAA GGCGTGGTTG GAATAGCCTT CATCAGGGCT
  CCCATTGGCC ACTCTTGCCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss8562543	WI_WGS_6_91221478	WI	MOUSE	f	SNP						G		A
ss51362801	NES13737340	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G		A		G	G	G	A	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6157039					SNP	G	G	G	G	G	G	A	A	G	G	G	A	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51362801	NES13737340	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:90455659 () rs orientation: forward

Symbol	Name	Function Class
Gm44421	predicted gene, 44421	within coordinates
Gm66826	predicted gene, 66826	1072 bp downstream
Rr634217	regulatory region 634217	1150 bp distal