rs6156899 SNP Detail

Summary

• ID
  rs6156899
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:6788917 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTCTTTGCT TTGCACTATC
  TGGTAAATGA GAGTCCAAGT TCCTTCACCA GTGAGAGTCA GCCCCACTAG ACCATCATTT
  TAGGAAGAAC ACCAATTACC AAAGCAGGAA AATACCTTCA TTTTCAGTTC TTATCAGAAT
  CTAGGTATTA GAACCAGTCT TTTTCTTATT TGTTGTTGTT GGTCAAGTTA ACATTTCTCT
  R
  TTTTTACTAA GTATTTTGAG ACCTTTTAAG CAGAGCATCA TCATGTCTGG ATCATATACA
  TAACTGAGGC AGAGTCTTCA ATGAGAACTT CACCCTTTGG TGAAGCTGGG TCAGTTGTTA
  AGTTCTGAAG GAAGCAACCT TACTATCCTA TTTTAGTTAA GCTAAGAATA GCTAACACCC
  TTCACCAAGC AAAGCCAGGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	CZECHII/EiJ	DBA/2J	MSM/Ms
ss8562402	WI_WGS_4_6265551	WI	MOUSE	f	SNP		G	A
ss145964693	ENSMUSSNP6425540	ENSEMBL	ENSEMBL_Sanger	f	SNP	G			G	A
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	CZECHII/EiJ	DBA/2J	MSM/Ms
rs6156899					SNP	G	G	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:6788917 () rs orientation: forward

Symbol	Name	Function Class
Rr588421	regulatory region 588421	1608 bp distal
Rr588422	regulatory region 588422	1603 bp proximal
Tox	thymocyte selection-associated high mobility group box	Intron