rs6156618 SNP Detail

Summary

• ID
  rs6156618
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:95678988 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGGACATCT ACTGCCCTCT
  CCCAAGCCCA GGACTGCCCA CCATCTGCTT ACTGCACAAA CACATCAAGC ACACGGCCCA
  CACCAAGGCG CTGCACTTAC TACTCCTTTG TTTGCAGTAC TCTTTTCGCA AATTACTCCA
  CAGTTCATAG CCCTTGGCTC CTCCCGGGAT TTGCTTAGCC TTAACCTTCC GACTGTCACT
  Y
  CCTCTACTGT AGGCACCATG TCCTTCCTGG CTTTTCCTAG TAGCATAAAT CAGGCCGGGT
  GAGGCAAGTG GTGGTGTGCA TTTCCTAGCT AGTAGCTAGG ATGATCATTT GAGAGGACTA
  AAAGCTGAAG ACTAGTCTAA CAGGGTATGA GGCCTTCTCT CAAAGAACAA AACAAACACG
  CACCACCCAG AACTATTTAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CZECHII/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NZW/LacJ
ss8562118	WI_WGS_6_96510299	WI	MOUSE	f	SNP						C	T
ss48021243	NES11896764	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C			C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CZECHII/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NZW/LacJ
rs6156618					SNP	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48021243	NES11896764	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:95678988 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr635030	regulatory region 635030			797 bp distal
Rr635031	regulatory region 635031			within coordinates
Rr635032	regulatory region 635032			302 bp proximal
Suclg2	succinate-Coenzyme A ligase, GDP-forming, beta subunit			Intron
				Noncoding-Transcript-Variant