rs6156493 SNP Detail

Summary

• ID
  rs6156493
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:95678915 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                         ATCCNTACCA
  CCTGCAGCCT GGGTTACACC CAGGAAACAT ACGTACAATA GACAACGTTC ATATTATGTN
  ATCTGTGGCA CTGTGGCTTG TGCTCCAGGA ACATAAACTT GGACACGNCT AACTTGGACA
  TCTACTGCCC TCTCCCAAGC CCAGGACTGC CCACCATCTG CTTANTGCAC AAACACATCA
  AGCACACGGC CCACACCAAG GCNCTGCACT TACTACTCCT TTGTTTGCAG TACTCTTTTC
  R
  CAAATTACTC CACAGTTCAT AGCCCTTGGC TCCTCCCGGG ATTTGCTTAG CCTTAACCTT
  CCGACTGTCA CTNCCTCTAC TGTAGGCACC ATGTCCTTCC TGGCTTTTCC TANTAGCATA
  AATCAGGCCG GGTGAGGCAA GTGGTGGTGT GCATTTCCTA GCTAGTAGCT AGGATGATCA
  TTTGAGAGGA CTAAAAGCTG AAGACTAGTC TAACAGGGTA TGAGGCCTTC TCTCAAAGAA
  CAAAACAAAC                                                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss8561993	WI_WGS_6_96510226	WI	MOUSE	f	SNP							G		A
ss48021241	NES11896763	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G		G		G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6156493					SNP	G	G	G	G	G	G	G	G	A	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48021241	NES11896763	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:95678915 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr635030	regulatory region 635030			724 bp distal
Rr635031	regulatory region 635031			18 bp proximal
Rr635032	regulatory region 635032			375 bp proximal
Suclg2	succinate-Coenzyme A ligase, GDP-forming, beta subunit			Intron
				Noncoding-Transcript-Variant