rs6156340 SNP Detail

Summary

• ID
  rs6156340
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:39513512 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGTGCACCA TTTGTGTGCC
  TGGTACCTTC AGAGAACAGA AGAGAGTATG GATTCTTTGT GACTAGAGTT ACAGACTTTT
  GTGAGATAGG TTGTGGATTC TGAGAACTGA ACCCAGGATC TCAAGAGCAG CCAATGCTCT
  TAAGTGCTAA GCAATCTCTC CAGCCTGAGT TAAAATATTT TTTAAACTAC CCAAGCTAAA
  K
  ATAATACTAA GATCAACTTT AATGCATACA GGCATTCCTC AATGGGTAGA TAGATAGATG
  GTACATAGAT AGATGGATAG ATAGATAGAT AGATAGATAG ATAGATAGAT AGATGATAGA
  GCAGCATACT TACATAAATA GATGGATAAA TACATATATG TATATGGATA CACAGATACA
  CAGATCAATC CAAAGATTGA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8561839	WI_WGS_3_39340296	WI	MOUSE	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6156340					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:39513512 () rs orientation: forward

Symbol	Name	Function Class
Gm30063	predicted gene, 30063	1417 bp upstream
Rr575757	regulatory region 575757	946 bp proximal
Rr575758	regulatory region 575758	1515 bp proximal