rs6156143 SNP Detail

Summary

• ID
  rs6156143
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:145643230 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTAGAAACAC TCAGACCTAT
  TATCTCAGAA ATTACAACCC AGCAATATTC CTTGATGTAC TCCAGGGACG GTCACCAAAA
  TAAATACTAG GAATATAAAC CTGAACAAGG CAGTCTAGCC CGTTCCATTA CCAGACTTCG
  TATTTTTCTG TAGAATTTAG CAGATAAGAA TCAGACCAAA TGGCAAGTTA TTAATGACTA
  Y
  GTCACCTCTG ACCAGGCATT TTTAACTGGG ATCTAAATAT TTACAATGGT ACCAACTTGG
  GGTGGGGGGC TGTAAAATTT CACCATTGAC CTCTAGTTTG TGGCAATACT CCGGTCTCAT
  CTTCTCAAGT GCTGGGGTTA GAAGTGTGCG CCCCCACCCC CTGCTTGCTT GTTCTTACTG
  TTTGGTAGAC AACGTCTCCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8561642	WI_WGS_3_146473320	WI	MOUSE	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6156143					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:145643230 () rs orientation: forward

Symbol	Name	Function Class
2410004B18Rik	RIKEN cDNA 2410004B18 gene	539 bp upstream
Cpgi13909	CpG island 13909	409 bp proximal
Rr398108	regulatory region 398108	358 bp upstream
Rr586873	regulatory region 586873	49 bp proximal
Rr586874	regulatory region 586874	474 bp proximal
Rr586875	regulatory region 586875	678 bp proximal
Rr586876	regulatory region 586876	1807 bp proximal
Tssr32317	transcription start site region 32317	529 bp upstream