rs6155709 SNP Detail

Summary

• ID
  rs6155709
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:145643190 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTCTGTCAA GTCTAGGTAC
  TTGGACGGAA GGAAGTTTTT CTAGAAACAC TCAGACCTAT TATCTCAGAA ATTACAACCC
  AGCAATATTC CTTGATGTAC TCCAGGGACG GTCACCAAAA TAAATACTAG GAATATAAAC
  CTGAACAAGG CAGTCTAGCC CGTTCCATTA CCAGACTTCG TATTTTTCTG TAGAATTTAG
  S
  AGATAAGAAT CAGACCAAAT GGCAAGTTAT TAATGACTAT GTCACCTCTG ACCAGGCATT
  TTTAACTGGG ATCTAAATAT TTACAATGGT ACCAACTTGG GGTGGGGGGC TGTAAAATTT
  CACCATTGAC CTCTAGTTTG TGGCAATACT CCGGTCTCAT CTTCTCAAGT GCTGGGGTTA
  GAAGTGTGCG CCCCCACCCC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8561207	WI_WGS_3_146473280	WI	MOUSE	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6155709					SNP	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:145643190 () rs orientation: forward

Symbol	Name	Function Class
2410004B18Rik	RIKEN cDNA 2410004B18 gene	579 bp upstream
Cpgi13909	CpG island 13909	449 bp proximal
Rr398108	regulatory region 398108	398 bp upstream
Rr586873	regulatory region 586873	89 bp proximal
Rr586874	regulatory region 586874	514 bp proximal
Rr586875	regulatory region 586875	718 bp proximal
Rr586876	regulatory region 586876	1847 bp proximal
Tssr32317	transcription start site region 32317	569 bp upstream