rs6155094 SNP Detail

Summary

• ID
  rs6155094
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:145643073 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAATTTTGTC ACATTACCAG
  GCTGGAGGGT GCGTGAGGGG ACCCTGAATT TGCTAATGAT GTCAGATCTG AGGATGATTT
  GGGTAACCCA GGACTTTGTA CTTTGGGAAC AATTGTATCT CTGTCAAGTC TAGGTACTTG
  GACGGAAGGA AGTTTTTCTA GAAACACTCA GACCTATTAT CTCAGAAATT ACAACCCAGC
  R
  ATATTCCTTG ATGTACTCCA GGGACGGTCA CCAAAATAAA TACTAGGAAT ATAAACCTGA
  ACAAGGCAGT CTAGCCCGTT CCATTACCAG ACTTCGTATT TTTCTGTAGA ATTTAGCAGA
  TAAGAATCAG ACCAAATGGC AAGTTATTAA TGACTATGTC ACCTCTGACC AGGCATTTTT
  AACTGGGATC TAAATATTTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	CZECHII/EiJ	DBA/2J	LG/J	SM/J
ss8560591	WI_WGS_3_146473163	WI	MOUSE	f	SNP				A	G
ss45437440	mCV24197864	ABI	CRAMUS_MOUSE	f	SNP	G	G	G			A
ss136040810	ENSMUSSNP6554192	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G			A
ss321009171	CHEV_3_145600282	CHEVERUD	SCREENING_POP	f	SNP							G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	CZECHII/EiJ	DBA/2J	LG/J	SM/J
rs6155094					SNP	G	G	G	A	G	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:145643073 () rs orientation: forward

Symbol	Name	Function Class
2410004B18Rik	RIKEN cDNA 2410004B18 gene	696 bp upstream
Cpgi13909	CpG island 13909	566 bp proximal
Rr398108	regulatory region 398108	515 bp upstream
Rr586873	regulatory region 586873	206 bp proximal
Rr586874	regulatory region 586874	631 bp proximal
Rr586875	regulatory region 586875	835 bp proximal
Rr586876	regulatory region 586876	1964 bp proximal
Tssr32317	transcription start site region 32317	686 bp upstream