rs6153902 SNP Detail

Summary

• ID
  rs6153902
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:127742014 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGAATCAGG TAAGAAGTAT
  TACTTTTCTT ACACTTCTCT GATAGAAAGC AAACTTTCCT TTTATCTTAG AGTTAGTATA
  TATTGATGAT AAAAATAGGT TGAGCCGAGA GTTTTTATCC ACACAAATAA TGAACGTTCA
  TTGTGCTTTC CACACGTCCA GCACCTCCTC TTACTGTCCT CTGATCCTGA TATCCTTCCT
  R
  TCTGCAGCAT CTGACTTAGA AAGACAACAA GCATCCCTGT AAAACCTCAT GTTTGGAAAC
  TAGCAGGTTC GGGCAGAGGC CAGGAGGCCA GAAGTTTTGC AGATCTGAGT GTTTCCTAAC
  TGCCAAGCAT GCTAATGTGC ATCTGACTTC TTTCTCTGTG AGCTTGACGG TCATGTGACC
  TACATCTTGC AACACTGCCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss8559395	WI_WGS_3_128432689	WI	MOUSE	f	SNP								A		G
ss45523455	mCV23992592	ABI	CRAMUS_MOUSE	f	SNP		G	G					A			A
ss51616826	NES14661534	PERLEGEN	MM_PANEL2	f	SNP	G		G	A	G	A	G		G		A	A	A		A	A	A	G		A
ss135875927	ENSMUSSNP2296694	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G								A
ss320958543	CHEV_3_127651283	CHEVERUD	SCREENING_POP	f	SNP														A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs6153902					SNP	G	G	G	A	G	A	G	A	G	G	A	A	A	A	A	A	A	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51616826	NES14661534	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127742014 () rs orientation: forward

Symbol	Name	Function Class
9830132P13Rik	RIKEN cDNA 9830132P13 gene	within coordinates
Rr398010	regulatory region 398010	656 bp upstream
Rr584909	regulatory region 584909	69 bp proximal
Rr584910	regulatory region 584910	508 bp proximal
Rr584911	regulatory region 584911	735 bp proximal
Tssr31619	transcription start site region 31619	1938 bp upstream