rs6153861 SNP Detail

Summary

• ID
  rs6153861
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:127741989 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGCATCAGC CTTATCCACC
  AACCAATGAA TCAGGTAAGA AGTATTACTT TTCTTACACT TCTCTGATAG AAAGCAAACT
  TTCCTTTTAT CTTAGAGTTA GTATATATTG ATGATAAAAA TAGGTTGAGC CGAGAGTTTT
  TATCCACACA AATAATGAAC GTTCATTGTG CTTTCCACAC GTCCAGCACC TCCTCTTACT
  S
  TCCTCTGATC CTGATATCCT TCCTATCTGC AGCATCTGAC TTAGAAAGAC AACAAGCATC
  CCTGTAAAAC CTCATGTTTG GAAACTAGCA GGTTCGGGCA GAGGCCAGGA GGCCAGAAGT
  TTTGCAGATC TGAGTGTTTC CTAACTGCCA AGCATGCTAA TGTGCATCTG ACTTCTTTCT
  CTGTGAGCTT GACGGTCATG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss8559354	WI_WGS_3_128432664	WI	MOUSE	f	SNP								G		C
ss45402097	mCV23992601	ABI	CRAMUS_MOUSE	f	SNP		C	C					G			G
ss51616829	NES14661533	PERLEGEN	MM_PANEL2	f	SNP	C		C	G	C	G	C		G		G	G	G		G	G	G	C		G
ss135875924	ENSMUSSNP275096	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C								G
ss320958542	CHEV_3_127651258	CHEVERUD	SCREENING_POP	f	SNP														G					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs6153861					SNP	C	C	C	G	C	G	C	G	G	C	G	G	G	G	G	G	G	C	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51616829	NES14661533	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127741989 () rs orientation: forward

Symbol	Name	Function Class
9830132P13Rik	RIKEN cDNA 9830132P13 gene	within coordinates
Rr398010	regulatory region 398010	681 bp upstream
Rr584909	regulatory region 584909	94 bp proximal
Rr584910	regulatory region 584910	533 bp proximal
Rr584911	regulatory region 584911	760 bp proximal
Tssr31619	transcription start site region 31619	1963 bp upstream