rs6153857 SNP Detail

Summary

• ID
  rs6153857
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:129996408 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCCAA GAATTTTCAC GGGGTGGGTG
  M
  GATTGGTGAG CTCAGTGGTT GCTGG                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss8559350	WI_WGS_4_127611391	WI	MOUSE	f	SNP	C			A
ss45626298	mCV22590592	ABI	CRAMUS_MOUSE	f	SNP	C	C	A	A	A
ss147459895	ENSMUSSNP3892178	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	A		A
ss321317066	CHEV_4_129779859	CHEVERUD	SCREENING_POP	f	SNP						A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs6153857					SNP	C	C	A	A	A	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:129996408 () rs orientation: forward

Symbol	Name	Function Class
Rr600438	regulatory region 600438	907 bp distal
Rr600439	regulatory region 600439	47 bp distal
Rr600440	regulatory region 600440	within coordinates
Rr600441	regulatory region 600441	1205 bp proximal
Rr600442	regulatory region 600442	1887 bp proximal