rs6153829 SNP Detail

Summary

• ID
  rs6153829
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:127741969 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTTTCAGAA ACAAAGGACT
  CTGCATCAGC CTTATCCACC AACCAATGAA TCAGGTAAGA AGTATTACTT TTCTTACACT
  TCTCTGATAG AAAGCAAACT TTCCTTTTAT CTTAGAGTTA GTATATATTG ATGATAAAAA
  TAGGTTGAGC CGAGAGTTTT TATCCACACA AATAATGAAC GTTCATTGTG CTTTCCACAC
  K
  TCCAGCACCT CCTCTTACTG TCCTCTGATC CTGATATCCT TCCTATCTGC AGCATCTGAC
  TTAGAAAGAC AACAAGCATC CCTGTAAAAC CTCATGTTTG GAAACTAGCA GGTTCGGGCA
  GAGGCCAGGA GGCCAGAAGT TTTGCAGATC TGAGTGTTTC CTAACTGCCA AGCATGCTAA
  TGTGCATCTG ACTTCTTTCT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss8559322	WI_WGS_3_128432644	WI	MOUSE	f	SNP							G		T
ss51616832	NES14661530	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G		T		G	G	G	G	G	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6153829					SNP	G	G	G	G	G	G	G	T	T	G	G	G	G	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51616832	NES14661530	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127741969 () rs orientation: forward

Symbol	Name	Function Class
9830132P13Rik	RIKEN cDNA 9830132P13 gene	within coordinates
Rr398010	regulatory region 398010	701 bp upstream
Rr584909	regulatory region 584909	114 bp proximal
Rr584910	regulatory region 584910	553 bp proximal
Rr584911	regulatory region 584911	780 bp proximal
Tssr31619	transcription start site region 31619	1983 bp upstream