rs6152414 SNP Detail

Summary

• ID
  rs6152414
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:141166759 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCATAAATT CATTAAGTTA
  TCATGGGAGT AGATGTGTGT GTGTGTGTGT GTGTGTGTGT GTGTGTGAAT GGATGAATGG
  CCCATCTACA CTTGCTCTAT CAAACCATCT TGTTTTTTTT TTGTTTTGTT TTTTGTTTTT
  TTTTTTAACC AGTTCATTAG ATGACTTGGC AAGAAGGAAC CCTCCATTGC CCACACCTCC
  R
  TCTTAGATTG TCCAACTATC TTCACAATTA TGAGGAGATG CATTTGTGTA TTTTATATAT
  AACCATTTTC AGTATTTTGT TACAGCAGTA TTAATGAAGT AAGACAATAG TGGTACTTCA
  ATTCAATATC CAGTGTGTGA GCTAAGCAAG ATAGTCCACA AAGAACTTAG TATCCTCACT
  TAGTATCCAC ATAGCAATCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ	LG/J	SM/J
ss8557907	WI_WGS_3_141969870	WI	MOUSE	f	SNP	G	A
ss320992349	CHEV_3_141123962	CHEVERUD	SCREENING_POP	f	SNP			A	G
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ	LG/J	SM/J
rs6152414					SNP	G	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:141166759 () rs orientation: forward

Symbol	Name	Function Class
Gm15688	predicted gene 15688	within coordinates
Gm66152	predicted gene, 66152	within coordinates
Rr586318	regulatory region 586318	1427 bp proximal