rs587578971 SNP Detail

Summary

• ID
  rs587578971
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr18:77591646 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCGTG CGTGCGTGCG TGCGTGCGTG
  C
  GTGTGTATGT GTGTGTGTAT GCATA                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	C57BL/6NJ	C57BR/cdJ	CZECHII/EiJ	FVB/NJ	JF1/MsJ	MA/MyJ	NON/ShiLtJ	NZW/LacJ	SEA/GnJ	SPRET/EiJ
ss924069459	MGP_WTSI_18_77503950	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	C57BL/6NJ	C57BR/cdJ	CZECHII/EiJ	FVB/NJ	JF1/MsJ	MA/MyJ	NON/ShiLtJ	NZW/LacJ	SEA/GnJ	SPRET/EiJ
rs587578971					SNP	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss924069459	MGP_WTSI_18_77503950	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:77591646 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ark2c	arkadia (RNF111) C-terminal like ring finger ubiquitin ligase 2C			Intron
				Noncoding-Transcript-Variant
Cpgi10275	CpG island 10275			1404 bp distal
Rr541132	regulatory region 541132			1350 bp distal
Rr541133	regulatory region 541133			989 bp proximal