GCGTG CGTGCGTGCG TGCGTGCGTG C GTGTGTATGT GTGTGTGTAT GCATA C = C Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | C57BL/6J |
C57BL/6NJ |
C57BR/cdJ |
CZECHII/EiJ |
FVB/NJ |
JF1/MsJ |
MA/MyJ |
NON/ShiLtJ |
NZW/LacJ |
SEA/GnJ |
SPRET/EiJ |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ss924069459 | MGP_WTSI_18_77503950 | EVA_MGPV3 | EVA_MGPV3 | f | SNP | C | C | C | C | C | C | C | C | C | C | C |
SNP Consensus Information | ||||||||||||||||
SNP | Consensus Type | C57BL/6J |
C57BL/6NJ |
C57BR/cdJ |
CZECHII/EiJ |
FVB/NJ |
JF1/MsJ |
MA/MyJ |
NON/ShiLtJ |
NZW/LacJ |
SEA/GnJ |
SPRET/EiJ |
||||
rs587578971 | SNP | C | C | C | C | C | C | C | C | C | C | C |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type |
Alleles |
---|---|---|---|---|---|---|
ss924069459 | MGP_WTSI_18_77503950 | SC_MOUSE_GENOMES | SC_MOUSE_GENOMES | f | SNP | C/T |
Location: Chr18:77591646 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Ark2c | arkadia (RNF111) C-terminal like ring finger ubiquitin ligase 2C | Intron | ||||||
Noncoding-Transcript-Variant | ||||||||
Cpgi10275 | CpG island 10275 | 1404 bp distal | ||||||
Rr541132 | regulatory region 541132 | 1350 bp distal | ||||||
Rr541133 | regulatory region 541133 | 989 bp proximal |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 03/18/2025 MGI 6.24 |
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