rs587413004 SNP Detail

Summary

• ID
  rs587413004
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:59260157 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCCTT CCTTCCTTCC TTCCTTTCTT
  Y
  CTTTCTTTCT TTCTTTCTTT CTTTC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C58/J	CAST/EiJ	CE/J	LEWES/EiJ	MOLF/EiJ	PL/J	SPRET/EiJ	ZALENDE/EiJ
ss916795733	MGP_WTSI_4_59260157	EVA_MGPV3	EVA_MGPV3	f	SNP	T	C	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C58/J	CAST/EiJ	CE/J	LEWES/EiJ	MOLF/EiJ	PL/J	SPRET/EiJ	ZALENDE/EiJ
rs587413004					SNP	T	C	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss916795733	MGP_WTSI_4_59260157	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:59260157 () rs orientation: forward

Symbol	Name	Function Class
Gm12596	predicted gene 12596	within coordinates
Gm68876	predicted gene, 68876	238 bp upstream
Gm68878	predicted gene, 68878	345 bp downstream
Rr367634	regulatory region 367634	1237 bp upstream
Rr398285	regulatory region 398285	798 bp upstream
Rr593020	regulatory region 593020	96 bp distal
Rr593021	regulatory region 593021	143 bp distal
Rr593022	regulatory region 593022	871 bp proximal
Tssr37421	transcription start site region 37421	104 bp downstream