rs587190145 SNP Detail

Summary

• ID
  rs587190145
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:119495370 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAAAT ACTTAGGGTT TTTTTTTTTG
  K
  TTTGTTTTTT TTTTGTTGTT TTTTT                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	CAST/EiJ	CE/J	CZECHII/EiJ	DBA/1J	FVB/NJ	JF1/MsJ	MOLF/EiJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PWK/PhJ	QSi3/Ianm	SJL/J	SPRET/EiJ	ST/bJ
ss915659809	MGP_WTSI_2_119664889	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	G	G	G	G	G	G	G	T	T	G	T	T	G	G	T	T	T	G	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	CAST/EiJ	CE/J	CZECHII/EiJ	DBA/1J	FVB/NJ	JF1/MsJ	MOLF/EiJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PWK/PhJ	QSi3/Ianm	SJL/J	SPRET/EiJ	ST/bJ
rs587190145					SNP	T	T	G	G	G	G	G	G	G	T	T	G	T	T	G	G	T	T	T	G	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss915659809	MGP_WTSI_2_119664889	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:119495370 () rs orientation: forward

Symbol	Name	Function Class
Gm75025	predicted gene, 75025	215 bp downstream
Gm75032	predicted gene, 75032	204 bp upstream
H3f3c	H3 histone, family 3C	737 bp downstream
Rr397235	regulatory region 397235	1917 bp downstream
Rr563558	regulatory region 563558	1578 bp distal
Rr563559	regulatory region 563559	1043 bp proximal
Tssr25826	transcription start site region 25826	1261 bp downstream