rs586806365 SNP Detail

Summary

• ID
  rs586806365
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:104961852 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGGGG GGGGTGGGGG GTGGGGGTGG
  K
  GGTGGTGGGG GGGCCTGTTG AGAGG                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	FVB/NJ	JF1/MsJ	LG/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SWR/J	ZALENDE/EiJ
ss916331781	MGP_WTSI_3_105054536	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	T	G	G	T	T	G	T	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	FVB/NJ	JF1/MsJ	LG/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SWR/J	ZALENDE/EiJ
rs586806365					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	T	G	G	T	T	G	T	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss916331781	MGP_WTSI_3_105054536	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:104961852 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13657	CpG island 13657	1293 bp distal
Cttnbp2nl	CTTNBP2 N-terminal like	1390 bp upstream
Rr367520	regulatory region 367520	1386 bp downstream
Rr582659	regulatory region 582659	1596 bp distal
Rr582660	regulatory region 582660	900 bp distal
Rr582661	regulatory region 582661	4 bp proximal
Tssr34913	transcription start site region 34913	1962 bp upstream
Tssr34914	transcription start site region 34914	1819 bp upstream
Tssr34915	transcription start site region 34915	1598 bp upstream
Tssr34916	transcription start site region 34916	1549 bp upstream
Tssr34917	transcription start site region 34917	1385 bp upstream
Tssr34918	transcription start site region 34918	340 bp downstream