rs586603854 SNP Detail

Summary

• ID
  rs586603854
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:105806100 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCCTC CCTCCCTCCC TCCCTCCCTC
  C
  CTCCCTCCCT CCCTCCCTCC CTCCC                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/10SnJ	CBA/J	CE/J	CZECHII/EiJ	FVB/NJ	NON/ShiLtJ	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	SJL/J	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss916333656	MGP_WTSI_3_105898784	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/10SnJ	CBA/J	CE/J	CZECHII/EiJ	FVB/NJ	NON/ShiLtJ	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	SJL/J	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs586603854					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss916333656	MGP_WTSI_3_105898784	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:105806100 () rs orientation: forward

Symbol	Name	Function Class
Rr397920	regulatory region 397920	1065 bp upstream
Rr582806	regulatory region 582806	100 bp proximal
Rr582807	regulatory region 582807	753 bp proximal
Rr582808	regulatory region 582808	1185 bp proximal
Rr582809	regulatory region 582809	1566 bp proximal
Tmigd3	transmembrane and immunoglobulin domain containing 3	Intron