rs586446681 SNP Detail

Summary

• ID
  rs586446681
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:147605736 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTGCT GCTGCTGCTC TTCCTCCTCC
  W
  CCTCCTTCTG CTGCTGCTGC CTCCT                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	CAST/EiJ	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	LG/J	LP/J	MOLF/EiJ	NZO/HlLtJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SPRET/EiJ	ZALENDE/EiJ
ss917138529	MGP_WTSI_4_147521279	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A	A	T	A	A	T	T	T	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	CAST/EiJ	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	LG/J	LP/J	MOLF/EiJ	NZO/HlLtJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SPRET/EiJ	ZALENDE/EiJ
rs586446681					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A	A	T	A	A	T	T	T	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss917138529	MGP_WTSI_4_147521279	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:147605736 () rs orientation: forward

Symbol	Name	Function Class
Gm15951	predicted gene 15951	412 bp upstream
Gm69897	predicted gene, 69897	within coordinates
Rr398830	regulatory region 398830	1345 bp downstream
Rr398831	regulatory region 398831	637 bp upstream
Rr604494	regulatory region 604494	1442 bp distal
Rr604495	regulatory region 604495	451 bp distal
Vmn2r-ps20	vomeronasal 2, receptor, pseudogene 20	242 bp upstream