rs586380552 SNP Detail

Summary

• ID
  rs586380552
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:135751016 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAAAG AAAGAAAGGA AGGAAGGAAG
  R
  AAGAAAGAAA GAAAGAAAGA AAGAA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129S5/SvEvBrd	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CZECHII/EiJ	I/LnJ	MA/MyJ	NZO/HlLtJ	NZW/LacJ	RF/J	RIIIS/J	SM/J	WSB/EiJ
ss917097123	MGP_WTSI_4_136023705	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	A	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129S5/SvEvBrd	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CZECHII/EiJ	I/LnJ	MA/MyJ	NZO/HlLtJ	NZW/LacJ	RF/J	RIIIS/J	SM/J	WSB/EiJ
rs586380552					SNP	G	G	G	G	G	G	G	G	G	G	A	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss917097123	MGP_WTSI_4_136023705	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:135751016 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15090	CpG island 15090	1591 bp distal
Gm68304	predicted gene, 68304	within coordinates
Rr398604	regulatory region 398604	1733 bp downstream
Rr602239	regulatory region 602239	1953 bp distal
Rr602240	regulatory region 602240	1694 bp distal
Rr602241	regulatory region 602241	1504 bp distal
Rr602242	regulatory region 602242	1797 bp proximal
Tssr44025	transcription start site region 44025	1969 bp upstream