rs586351206 SNP Detail

Summary

• ID
  rs586351206
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:145506798 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTCTT TCTGTCTGTC TGTCTTTCTT
  W
  CTGTCTTTCT TTCTTTCTTT CTTTC                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	BALB/cJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BR/cdJ	C57L/J	CE/J	CZECHII/EiJ	DBA/1J	FVB/NJ	JF1/MsJ	MA/MyJ	NON/ShiLtJ	PL/J	QSi5/Ianm	SJL/J	ST/bJ	SWR/J	ZALENDE/EiJ
ss917133339	MGP_WTSI_4_145780228	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	A	A	T	A	A	T	T	T	T	T	A	A	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	BALB/cJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BR/cdJ	C57L/J	CE/J	CZECHII/EiJ	DBA/1J	FVB/NJ	JF1/MsJ	MA/MyJ	NON/ShiLtJ	PL/J	QSi5/Ianm	SJL/J	ST/bJ	SWR/J	ZALENDE/EiJ
rs586351206					SNP	T	T	A	A	T	A	A	T	T	T	T	T	A	A	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss917133339	MGP_WTSI_4_145780228	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:145506798 () rs orientation: forward

Symbol	Name	Function Class
Gm13236	predicted gene 13236	within coordinates
Gm68702	predicted gene, 68702	1281 bp downstream
Rr398699	regulatory region 398699	1115 bp upstream
Rr604399	regulatory region 604399	810 bp proximal
Rr604400	regulatory region 604400	1212 bp proximal
Rr604401	regulatory region 604401	1300 bp proximal