rs585868999 SNP Detail

Summary

• ID
  rs585868999
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:110048069 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAAAA AAAAAAAAAA AAAAAACAAA
  A
  AAACAAAAAA ACAAAAAAAG CAAGG                                      
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C58/J	CZECHII/EiJ	JF1/MsJ	KK/HlJ	MA/MyJ	MOLF/EiJ	NZB/BlNJ	RIIIS/J	SPRET/EiJ	WSB/EiJ	ZALENDE/EiJ
ss916351457	MGP_WTSI_3_110140753	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C58/J	CZECHII/EiJ	JF1/MsJ	KK/HlJ	MA/MyJ	MOLF/EiJ	NZB/BlNJ	RIIIS/J	SPRET/EiJ	WSB/EiJ	ZALENDE/EiJ
rs585868999					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss916351457	MGP_WTSI_3_110140753	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:110048069 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi13719	CpG island 13719			1497 bp proximal
Ntng1	netrin G1			Intron
				Noncoding-Transcript-Variant
Rr583463	regulatory region 583463			599 bp proximal
Rr583464	regulatory region 583464			1075 bp proximal
Rr583465	regulatory region 583465			1270 bp proximal
Tssr35233	transcription start site region 35233			1991 bp downstream