rs585756567 SNP Detail

Summary

• ID
  rs585756567
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:118996962 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCTGT CTCTGTCTCT CTGTCTCTCT
  S
  TCTCTGTCTC TCTCTCTGTC TCTCT                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.RIII-H2 H2-T18/(71NS)SnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	CZECHII/EiJ	JF1/MsJ	KK/HlJ	LG/J	MOLF/EiJ	PWK/PhJ	SPRET/EiJ
ss915658403	MGP_WTSI_2_119166481	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	C	G	G	G	G	C	G
SNP Consensus Information
SNP					Consensus Type	B10.RIII-H2 H2-T18/(71NS)SnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	CZECHII/EiJ	JF1/MsJ	KK/HlJ	LG/J	MOLF/EiJ	PWK/PhJ	SPRET/EiJ
rs585756567					SNP	G	G	G	G	G	G	G	C	G	G	G	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss915658403	MGP_WTSI_2_119166481	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:118996962 () rs orientation: forward

Symbol	Name	Function Class
Gchfr	GTP cyclohydrolase I feedback regulator	1307 bp upstream
Rr563425	regulatory region 563425	867 bp distal
Rr563426	regulatory region 563426	802 bp proximal
Rr563427	regulatory region 563427	1134 bp proximal
Rr563428	regulatory region 563428	1303 bp proximal
Tssr19604	transcription start site region 19604	1277 bp upstream
Tssr19605	transcription start site region 19605	1301 bp upstream