rs585588885 SNP Detail

Summary

• ID
  rs585588885
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:144922858 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTGTC TCGAAAACAC AAAAAACAAA
  M
  AAACAAACAA ACAAACAAAC AAACA                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LP/J	MOLF/EiJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SM/J	SWR/J
ss917130860	MGP_WTSI_4_145196288	EVA_MGPV3	EVA_MGPV3	f	SNP	C	A	C	C	C	A	C	C	C	C	A	A	C	A	A	C	C	C	C	A	C	A	C	A	C	A	A	A	C	C	A	C	A
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LP/J	MOLF/EiJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SM/J	SWR/J
rs585588885					SNP	C	A	C	C	C	A	C	C	C	C	A	A	C	A	A	C	C	C	C	A	C	A	C	A	C	A	A	A	C	C	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss917130860	MGP_WTSI_4_145196288	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:144922858 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15267	CpG island 15267	947 bp distal
Rr398672	regulatory region 398672	1070 bp downstream
Rr604319	regulatory region 604319	1294 bp distal
Rr604320	regulatory region 604320	1919 bp distal
Rr604321	regulatory region 604321	793 bp distal
Rr604322	regulatory region 604322	1180 bp distal
Rr604323	regulatory region 604323	407 bp proximal
Tssr44481	transcription start site region 44481	1324 bp upstream
Tssr44482	transcription start site region 44482	1295 bp upstream
Tssr44483	transcription start site region 44483	1244 bp upstream
Vps13d	vacuolar protein sorting 13D	1283 bp upstream