rs585527267 SNP Detail

Summary

• ID
  rs585527267
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:115894864 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CACAC ACACACACAC ACACCACTCA
  C
  ACGCTCTCGC CGCCCGCAGA GAACC                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	CAST/EiJ	JF1/MsJ	LG/J	SM/J
ss915648350	MGP_WTSI_2_116064383	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	CAST/EiJ	JF1/MsJ	LG/J	SM/J
rs585527267					SNP	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss915648350	MGP_WTSI_2_116064383	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:115894864 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
2700033N17Rik	RIKEN cDNA 2700033N17 gene			1806 bp downstream
Cpgi12066	CpG island 12066			1922 bp distal
Cpgi12067	CpG island 12067			within coordinates
Cpgi12068	CpG island 12068			1149 bp proximal
Meis2	Meis homeobox 2			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
				Splice-Site
Rr562985	regulatory region 562985			119 bp proximal
Rr562986	regulatory region 562986			328 bp proximal
Rr562987	regulatory region 562987			1446 bp proximal
Tssr25719	transcription start site region 25719			1821 bp upstream
Tssr25720	transcription start site region 25720			483 bp upstream
Tssr25721	transcription start site region 25721			175 bp downstream
Tssr25722	transcription start site region 25722			350 bp downstream
Tssr25723	transcription start site region 25723			376 bp downstream
Tssr25724	transcription start site region 25724			745 bp downstream
Tssr25725	transcription start site region 25725			834 bp downstream
Tssr25726	transcription start site region 25726			1262 bp downstream
Tssr25727	transcription start site region 25727			1290 bp downstream
Tssr25728	transcription start site region 25728			1308 bp downstream
Tssr25729	transcription start site region 25729			1335 bp downstream
Tssr25730	transcription start site region 25730			1402 bp downstream
Tssr25731	transcription start site region 25731			1415 bp downstream
Tssr25732	transcription start site region 25732			1561 bp downstream
Tssr25733	transcription start site region 25733			1651 bp downstream