rs585461422 SNP Detail

Summary

• ID
  rs585461422
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:148218173 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCTTT CTCTCTCTTT CTCTCTCTCT
  Y
  TCTCTCTCTC TCTCTCTCTC TCTAT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cJ	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/10SnJ	C57L/J	CE/J	LEWES/EiJ	LG/J	MA/MyJ	NOD/ShiLtJ	NZB/BlNJ	PL/J	SJL/J	SWR/J
ss915742751	MGP_WTSI_2_148376253	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	C	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cJ	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/10SnJ	C57L/J	CE/J	LEWES/EiJ	LG/J	MA/MyJ	NOD/ShiLtJ	NZB/BlNJ	PL/J	SJL/J	SWR/J
rs585461422					SNP	T	T	T	T	T	T	T	T	T	T	T	T	C	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss915742751	MGP_WTSI_2_148376253	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:148218173 () rs orientation: forward

Symbol	Name	Function Class
Gm39957	predicted gene, 39957	77 bp downstream
Rr566887	regulatory region 566887	146 bp distal
Rr566888	regulatory region 566888	722 bp distal
Rr566889	regulatory region 566889	341 bp distal