rs585028457 SNP Detail

Summary

• ID
  rs585028457
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:19365704 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCGCC GCGCCGCGCC GCGCCGCGCC
  S
  CGCGCCCCCC CGGCCCCTCC CGCCT                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	RIIIS/J	SJL/J	SPRET/EiJ	SWR/J	WSB/EiJ
ss915958594	MGP_WTSI_3_19311540	EVA_MGPV3	EVA_MGPV3	f	SNP	C	G	C	C	C	C	C	C	G	C	C	C	C	G	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	RIIIS/J	SJL/J	SPRET/EiJ	SWR/J	WSB/EiJ
rs585028457					SNP	C	G	C	C	C	C	C	C	G	C	C	C	C	G	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss915958594	MGP_WTSI_3_19311540	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:19365704 () rs orientation: forward

Symbol	Name	Function Class
3110037C07Rik	RIKEN cDNA 3110037C07 gene	Coding-Synonymous
Cpgi13002	CpG island 13002	within coordinates
Gm66414	predicted gene, 66414	97 bp upstream
Pde7a	phosphodiesterase 7A	218 bp upstream
Rr573969	regulatory region 573969	229 bp distal
Rr573970	regulatory region 573970	within coordinates
Rr573971	regulatory region 573971	108 bp proximal
Tssr28510	transcription start site region 28510	835 bp downstream
Tssr28511	transcription start site region 28511	681 bp downstream
Tssr28512	transcription start site region 28512	67 bp downstream
Tssr28513	transcription start site region 28513	45 bp downstream
Tssr32696	transcription start site region 32696	277 bp upstream
Tssr32697	transcription start site region 32697	226 bp upstream
Tssr32698	transcription start site region 32698	196 bp upstream
Tssr32699	transcription start site region 32699	162 bp upstream
Tssr32700	transcription start site region 32700	137 bp upstream
Tssr32701	transcription start site region 32701	652 bp downstream