rs584965434 SNP Detail

Summary

• ID
  rs584965434
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:28076418 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAAGT CGTCATAAAT AAAGGGCCCA
  Y
  TGGTTGGGGG AGAAGGGATT TGGCA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss925343281	MGP_WTSI_7_28376993_mm38	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs584965434					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss925343281	MGP_WTSI_7_28376993_mm38	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:28076418 () rs orientation: forward

Symbol	Name	Function Class
Gm44710	predicted gene 44710	1987 bp upstream
Gm73785	predicted gene, 73785	319 bp upstream
Gm73803	predicted gene, 73803	1421 bp upstream
Rr380568	regulatory region 380568	207 bp downstream
Rr400209	regulatory region 400209	1061 bp downstream
Rr644238	regulatory region 644238	931 bp distal
Rr644239	regulatory region 644239	within coordinates
Rr644240	regulatory region 644240	940 bp proximal
Rr644241	regulatory region 644241	1497 bp proximal
Rr644242	regulatory region 644242	1998 bp proximal
Tssr65460	transcription start site region 65460	1201 bp downstream
Tssr65461	transcription start site region 65461	430 bp downstream
Tssr65462	transcription start site region 65462	255 bp downstream
Tssr65463	transcription start site region 65463	493 bp upstream
Tssr65464	transcription start site region 65464	1003 bp upstream
Tssr71489	transcription start site region 71489	1409 bp upstream
Tssr71490	transcription start site region 71490	within coordinates
Tssr71491	transcription start site region 71491	81 bp downstream
Tssr71492	transcription start site region 71492	137 bp downstream
Tssr71493	transcription start site region 71493	181 bp downstream
Tssr71494	transcription start site region 71494	228 bp downstream
Tssr71495	transcription start site region 71495	273 bp downstream
Tssr71496	transcription start site region 71496	624 bp downstream
Tssr71497	transcription start site region 71497	872 bp downstream
Tssr71498	transcription start site region 71498	930 bp downstream
Tssr71499	transcription start site region 71499	1023 bp downstream
Tssr71500	transcription start site region 71500	1056 bp downstream
Tssr71501	transcription start site region 71501	1074 bp downstream
Tssr71502	transcription start site region 71502	1114 bp downstream
Tssr71503	transcription start site region 71503	1150 bp downstream
Tssr71504	transcription start site region 71504	1178 bp downstream
Tssr71505	transcription start site region 71505	1194 bp downstream
Tssr71506	transcription start site region 71506	1213 bp downstream
Tssr71507	transcription start site region 71507	1254 bp downstream
Tssr71508	transcription start site region 71508	1276 bp downstream
Tssr71509	transcription start site region 71509	1314 bp downstream
Tssr71510	transcription start site region 71510	1393 bp downstream
Tssr71511	transcription start site region 71511	1432 bp downstream
Tssr71512	transcription start site region 71512	1487 bp downstream
Zfp36	zinc finger protein 36	mRNA-UTR