rs584825289 SNP Detail

Summary

• ID
  rs584825289
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:14937802 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCTTT AATAGGAATT CCATTGGCCT
  Y
  CTTCTTTAAG ATCTCTTTCT CCCCT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss915930098	MGP_WTSI_3_14872742	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs584825289					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss915930098	MGP_WTSI_3_14872742	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:14937802 () rs orientation: forward

Symbol	Name	Function Class
Car3	carbonic anhydrase 3	361 bp downstream
Rr397608	regulatory region 397608	1660 bp upstream
Rr573713	regulatory region 573713	973 bp distal
Rr573714	regulatory region 573714	1727 bp proximal
Rr573715	regulatory region 573715	1823 bp proximal
Tssr28448	transcription start site region 28448	1196 bp downstream
Tssr28449	transcription start site region 28449	1132 bp downstream
Tssr28450	transcription start site region 28450	1089 bp downstream
Tssr28451	transcription start site region 28451	1072 bp downstream
Tssr28452	transcription start site region 28452	1050 bp downstream
Tssr28453	transcription start site region 28453	1037 bp downstream
Tssr28454	transcription start site region 28454	1025 bp downstream
Tssr28455	transcription start site region 28455	1007 bp downstream
Tssr28456	transcription start site region 28456	970 bp downstream
Tssr28457	transcription start site region 28457	908 bp downstream
Tssr28458	transcription start site region 28458	711 bp downstream
Tssr28459	transcription start site region 28459	674 bp downstream
Tssr28460	transcription start site region 28460	588 bp downstream
Tssr28461	transcription start site region 28461	532 bp downstream
Tssr28462	transcription start site region 28462	495 bp downstream
Tssr28463	transcription start site region 28463	444 bp downstream
Tssr28464	transcription start site region 28464	403 bp downstream
Tssr28465	transcription start site region 28465	264 bp downstream
Tssr32653	transcription start site region 32653	938 bp upstream
Tssr32654	transcription start site region 32654	205 bp upstream