rs584563770 SNP Detail

Summary

• ID
  rs584563770
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:148246430 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGTCT GTCTGTCTGT CTGTCTCTCT
  G
  TGTGTGTGTG TGTGTGTGTG TATAC                                      
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	CAST/EiJ	DBA/1J	FVB/NJ	I/LnJ	MOLF/EiJ	NZB/BlNJ	RF/J	RIIIS/J	SPRET/EiJ
ss917140612	MGP_WTSI_4_148161973	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	CAST/EiJ	DBA/1J	FVB/NJ	I/LnJ	MOLF/EiJ	NZB/BlNJ	RF/J	RIIIS/J	SPRET/EiJ
rs584563770					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss917140612	MGP_WTSI_4_148161973	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:148246430 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Fbxo2	F-box protein 2			Intron
				Noncoding-Transcript-Variant
Fbxo44	F-box protein 44			1767 bp upstream
Rr398857	regulatory region 398857			1644 bp downstream
Rr604608	regulatory region 604608			1342 bp distal
Rr604609	regulatory region 604609			212 bp distal
Tssr40263	transcription start site region 40263			1777 bp downstream
Tssr40264	transcription start site region 40264			1343 bp downstream
Tssr40265	transcription start site region 40265			1321 bp downstream
Tssr40266	transcription start site region 40266			1293 bp downstream
Tssr44600	transcription start site region 44600			1901 bp upstream