rs584507687 SNP Detail

Summary

• ID
  rs584507687
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:132741302 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTACC AGTCTGTTCA TCCCCCCCCC
  A
  CCCCCCCCAC CCCCCCAGCA TGGGA                                      
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BALB/cByJ	C3H/HeJ	C57BL/6J	CE/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	RIIIS/J	ST/bJ
ss917085879	MGP_WTSI_4_133013991	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	BALB/cByJ	C3H/HeJ	C57BL/6J	CE/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	RIIIS/J	ST/bJ
rs584507687					SNP	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss917085879	MGP_WTSI_4_133013991	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:132741302 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ahdc1	AT hook, DNA binding motif, containing 1			Intron
				Noncoding-Transcript-Variant
Cpgi14982	CpG island 14982			850 bp distal
Rr601156	regulatory region 601156			1777 bp distal
Rr601157	regulatory region 601157			within coordinates
Rr601158	regulatory region 601158			925 bp proximal
Rr601159	regulatory region 601159			1770 bp proximal