rs584444925 SNP Detail

Summary

• ID
  rs584444925
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:135621342 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAAGA AAGAAAGAAA GAAAGAAAGA
  M
  GGAAGGAAGG AAGGAAGGAA GGAAG                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	FVB/NJ	I/LnJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	RF/J	RIIIS/J	ST/bJ	SWR/J
ss917096659	MGP_WTSI_4_135894031	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	C	C	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C	A	C	C	C	A	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	FVB/NJ	I/LnJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	RF/J	RIIIS/J	ST/bJ	SWR/J
rs584444925					SNP	A	A	C	C	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C	A	C	C	C	A	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss917096659	MGP_WTSI_4_135894031	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:135621342 () rs orientation: forward

Symbol	Name	Function Class
Cnr2	cannabinoid receptor 2	1363 bp upstream
Rr602181	regulatory region 602181	882 bp distal
Rr602182	regulatory region 602182	566 bp distal
Rr602183	regulatory region 602183	960 bp proximal
Rr602184	regulatory region 602184	1374 bp proximal
Rr602185	regulatory region 602185	1940 bp proximal
Tssr39650	transcription start site region 39650	1149 bp upstream
Tssr39651	transcription start site region 39651	1353 bp upstream
Tssr39652	transcription start site region 39652	1383 bp upstream