rs584436783 SNP Detail

Summary

• ID
  rs584436783
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:115750031 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATATA TATATATATA TATATATATA
  Y
  ACACACACAT ATACATATGT GTATG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BR/cdJ	C57L/J	C58/J	CE/J	CZECHII/EiJ	DBA/1J	I/LnJ	NZB/BlNJ	NZW/LacJ	QSi3/Ianm	QSi5/Ianm	SJL/J	SWR/J	ZALENDE/EiJ
ss918307571	MGP_WTSI_6_115773070	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BR/cdJ	C57L/J	C58/J	CE/J	CZECHII/EiJ	DBA/1J	I/LnJ	NZB/BlNJ	NZW/LacJ	QSi3/Ianm	QSi5/Ianm	SJL/J	SWR/J	ZALENDE/EiJ
rs584436783					SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss918307571	MGP_WTSI_6_115773070	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:115750031 () rs orientation: forward

Symbol	Name	Function Class
Cand2	cullin associated and neddylation dissociated 2 (putative)	1487 bp upstream
Cpgi17874	CpG island 17874	1489 bp proximal
Rr368154	regulatory region 368154	1124 bp upstream
Rr637052	regulatory region 637052	1934 bp distal
Rr637053	regulatory region 637053	878 bp distal
Rr637054	regulatory region 637054	658 bp distal
Rr637055	regulatory region 637055	211 bp distal
Rr637056	regulatory region 637056	224 bp distal
Rr637057	regulatory region 637057	978 bp proximal
Rr637058	regulatory region 637058	1479 bp proximal
Tssr58325	transcription start site region 58325	1494 bp upstream